Tool for de novo identification, masking and clustering of all repeated sequences at the genomic scale. The tool can quickly and accurately detect any repeated sequences in genomic sequences in interspersed or clustered repeats. Direct and inverted repeat elements, perfect and imperfect microsatellite repeats, and any short or long tandem repeat belonging to a variety of higher order repeat structures of telomers or large satellite sequences can be detected. Numerous forms of repeat sequences and complex patterns can be identified, even for complex sequence variants and implicit or mixed types of repeat blocks.
Input format: Sequence(s) can be pasted or uploaded as a file in FASTA format.
Size Limitations: The length of the query sequence and the size of the batch file are not limited.
kmer (12-21 nt): | Minimal repeat length (nt): |
The results will appear instantly in the output fields (lower windows) - repetitive sequences in upper case. To export the results: select all (Ctrl-A), copy (Ctrl-C) and paste (Ctrl-V) to Excel sheet: